Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce2350Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains. (646 aa)    
Predicted Functional Partners:
sce2349
Amidase; Family membership.
 
     0.906
sce7033
Hypothetical protein.
  
     0.770
sce5384
Membrane protease subunits, stomatin/prohibitin homologs.
  
     0.769
sce6765
Hypothetical protein predicted by Glimmer/Critica.
  
     0.768
sce2332
Hypothetical protein.
  
     0.764
sce3540
Uncharacterized protein conserved in cyanobacteria.
  
     0.761
sce5370
Fibronectin type III domain protein.
  
     0.759
sce3086
Uncharacterized protein conserved in cyanobacteria.
  
     0.753
sce5352
Hypothetical protein.
  
     0.696
sce9262
Hypothetical protein.
  
     0.689
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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