STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce2354Uncharacterized protein conserved in bacteria. (496 aa)    
Predicted Functional Partners:
sce6575
Putative membrane protein.
  
     0.634
sce5690
FHA domain protein.
  
     0.598
sce2660
Unknown protein; Predicted phosphohydrolases.
  
     0.573
sce5896
Uncharacterized MobA-related protein.
  
     0.532
sce3327
Probable extracellular nuclease.
  
     0.531
dacB
Probable D-alanyl-D-alanine carboxypeptidase; High confidence in function and specificity.
     
 0.523
sce4155
Putative secreted protein.
  
     0.491
sce3820
Hypothetical protein predicted by Glimmer/Critica.
  
     0.488
sce4602
Hypothetical protein-signal peptide prediction.
  
     0.487
sce0252
Hypothetical protein predicted by Glimmer/Critica; Family membership.
  
     0.477
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.