Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce2367Transcriptional regulator, LacI family; Family membership. (729 aa)    
Predicted Functional Partners:
fruB
Fructose-specific MTP; High confidence in function and specificity; Belongs to the PEP-utilizing enzyme family.
   
 
 0.825
gltB1
Glutamate synthase (NADPH); High confidence in function and specificity.
   
 
 0.813
sce1346
Hybrid histidine kinase; Family membership.
  
 
 0.587
sce7776
Two-component hybrid histidine kinase; Family membership.
  
 
 0.587
sce3710
Sensory box/GGDEF family protein.
 
  
 0.547
leuO
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.532
rsbT3
Protein kinase; Specificity unclear.
  
 
 0.528
ptsH
Phosphocarrier protein HPr; High confidence in function and specificity.
 
 
 
 0.524
rsbT2
Positive regulator of sigma-B activity (switch protein/serine-threonine kinase).
  
 
 0.516
sce7775
Response regulatory domain-containing protein; Unnamed protein product; Family membership.
  
 
 0.515
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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