STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce2386Hypothetical protein predicted by Glimmer/Critica. (425 aa)    
Predicted Functional Partners:
sce3910
Hypothetical protein predicted by Glimmer/Critica.
  
     0.684
sce3967
Hypothetical protein/extracellular protease.
  
     0.656
sce6146
Hypothetical protein; Predicted ATPase.
  
     0.635
sce9100
Hypothetical protein; Family membership.
  
     0.561
cas2-2
Hypothetical protein; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
  
     0.561
sce9171
Hypothetical protein.
  
     0.553
sce2387
Non-ribosomal peptide synthetase; Family membership.
       0.545
sce7621
Hypothetical protein.
  
     0.508
sce2660
Unknown protein; Predicted phosphohydrolases.
  
     0.502
sce2384
Putative hydrolase.
       0.470
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.