Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce2390Putative dehydrogenases; Family membership. (324 aa)    
Predicted Functional Partners:
sce0887
Oxidoreductase; Family membership.
  
     0.685
lysS
Lysine--tRNA ligase; Family membership; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.669
sce5361
Putative oxidoreductase; Family membership.
  
     0.590
sce7613
Putative oxidoreductase.
  
     0.589
sce0875
UDP-glucose/GDP-mannose dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
  
 0.479
cysK1
CysK1 protein; Family membership.
       0.456
galK
Galactokinase; High confidence in function and specificity; Belongs to the GHMP kinase family. GalK subfamily.
  
 
 0.415
mnaA
UDP-N-acetylglucosamine 2-epimerase; High confidence in function and specificity; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
 
  
 0.400
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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