STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
treYMalto-oligosyltrehalose synthase; High confidence in function and specificity. (1062 aa)    
Predicted Functional Partners:
treZ
Malto-oligosyltrehalose trehalohydrolase; High confidence in function and specificity.
 
 0.999
sce7170
Alpha-amylase-family protein; Family membership.
 
 0.996
sce1303
Glycogen operon protein; Family membership; Belongs to the glycosyl hydrolase 13 family.
 
 0.995
sce2378
Glycogen debranching enzyme; Family membership; Belongs to the glycosyl hydrolase 13 family.
 
 0.995
treS
Trehalose synthase; High confidence in function and specificity.
 
 
 0.989
malQ2
4-alpha-glucanotransferase; High confidence in function and specificity.
  
 0.976
sce3064
Alpha amylase, catalytic region; Family membership.
 
 
0.940
sce2393
Hypothetical protein predicted by Glimmer/Critica.
       0.773
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
 
  
 0.764
sce0351
4-alpha-glucanotransferase homolog; Family membership.
 
  
 0.685
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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