STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mreCRod shape-determining protein MreC; Involved in formation and maintenance of cell shape. (285 aa)    
Predicted Functional Partners:
mreB
Rod shape-determining protein MreB; High confidence in function and specificity.
 
 
 0.994
sce2410
Hypothetical protein predicted by Glimmer/Critica.
  
 
 0.984
ftsI2
Peptidoglycan glycosyltransferase; High confidence in function and specificity.
 
 
 0.975
rodA
Rod shape-determining protein RodA; High confidence in function and specificity; Belongs to the SEDS family.
 
  
 0.964
minC
Septum site-determining protein MinC; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family.
  
  
 0.898
minD
Septum site-determining protein minD (cell division inhibitor minD); High confidence in function and specificity.
  
    0.825
sce0453
DNA repair protein; Family membership.
  
  
 0.751
sce6487
DNA repair protein; Specificity unclear; Belongs to the UPF0758 family.
  
  
 0.751
sce7501
DNA repair protein; Specificity unclear.
  
  
 0.751
sce7502
DNA repair protein RadC; Specificity unclear.
  
  
 0.751
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.