STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mreCRod shape-determining protein MreC; Involved in formation and maintenance of cell shape. (285 aa)    
Predicted Functional Partners:
mreB
Rod shape-determining protein MreB; High confidence in function and specificity.
 
 
 0.995
sce2410
Hypothetical protein predicted by Glimmer/Critica.
  
 
 0.983
ftsI2
Peptidoglycan glycosyltransferase; High confidence in function and specificity.
 
 
 0.976
rodA
Rod shape-determining protein RodA; High confidence in function and specificity; Belongs to the SEDS family.
 
  
 0.962
minC
Septum site-determining protein MinC; Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization; Belongs to the MinC family.
  
  
 0.887
minD
Septum site-determining protein minD (cell division inhibitor minD); High confidence in function and specificity.
  
    0.838
ftsI1
Peptidoglycan glycosyltransferase; High confidence in function and specificity.
 
 
 0.742
pbp4
Penicillin-binding protein.
 
 
 0.742
murC1
UDP-N-acetylmuramate-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
  
 0.732
sce0453
DNA repair protein; Family membership.
  
  
 0.673
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.