Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rodARod shape-determining protein RodA; High confidence in function and specificity; Belongs to the SEDS family. (378 aa)    
Predicted Functional Partners:
ftsI2
Peptidoglycan glycosyltransferase; High confidence in function and specificity.
 
 0.997
mreC
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
 
  
 0.964
ftsQ
Cell division protein; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.
  
 
 0.957
ftsI1
Peptidoglycan glycosyltransferase; High confidence in function and specificity.
 
 0.954
murG
Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.
  
 0.947
ftsW
Cell division protein; High confidence in function and specificity; Belongs to the SEDS family.
 
  
0.943
mreB
Rod shape-determining protein MreB; High confidence in function and specificity.
 
 
 0.927
pbp4
Penicillin-binding protein.
 
 
 0.903
ftsI3
Pencillin-binding transpeptidase with putative regulatory N-terminal domain; High confidence in function and specificity.
 
 
 0.895
sce2410
Hypothetical protein predicted by Glimmer/Critica.
  
  
 0.891
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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