STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce2422Putative metallopeptidase; Family membership. (675 aa)    
Predicted Functional Partners:
sce2423
Hypothetical protein predicted by Glimmer/Critica.
       0.793
sce2532
Hypothetical protein predicted by Glimmer/Critica.
  
     0.530
sce9089
Hypothetical protein; Predicted aminopeptidases.
 
 
 
 0.512
sce2421
No similarity; Function unclear.
       0.507
sce2420
Hsp70 heat shock protein; Family membership; Belongs to the heat shock protein 70 family.
   
 
 0.494
sce1276
Hypothetical protein.
  
     0.481
sce5806
Protein kinase; Family membership.
 
    0.461
sce5605
Hypothetical protein.
  
     0.457
sce0655
Protein kinase; Family membership.
 
    0.440
sce1670
Hypothetical protein.
  
     0.439
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.