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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce2430Unnamed protein product; Hypothetical protein. (248 aa)    
Predicted Functional Partners:
sce2431
Sulfate/thiosulfate import ATP-binding protein cysA; High confidence in function and specificity.
 
 
 0.965
sce2429
Hypothetical protein.
 
  
 0.960
sce2534
Putative ABC-2 type transport system ATP-binding protein.
 
 
 0.854
sce4421
Putative ABC-2 type transport system ATP-binding protein.
 
 
 0.853
sce2428
Hypothetical protein predicted by Glimmer/Critica.
       0.781
sce8335
Putative ABC transporter ATP-binding protein.
 
 
 0.752
sce4423
Hypothetical protein; ABC-type uncharacterized transport system involved in gliding motility auxiliary component.
 
  
 0.726
sce2532
Hypothetical protein predicted by Glimmer/Critica.
 
  
 0.671
sce2427
Hypothetical protein predicted by Glimmer/Critica.
       0.620
sce5790
Putative ABC transporter, ATP-binding protein.
 
 
 0.543
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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