Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce2431Sulfate/thiosulfate import ATP-binding protein cysA; High confidence in function and specificity. (358 aa)    
Predicted Functional Partners:
sce2430
Unnamed protein product; Hypothetical protein.
 
 
 0.965
sce2429
Hypothetical protein.
 
   
 0.957
sce4422
Putative ABC-2 type transport system permease protein.
 
 0.855
sce2533
Putative ABC-2 type transport system permease protein.
 
 
 0.849
sce2428
Hypothetical protein predicted by Glimmer/Critica.
       0.798
sce8335
Putative ABC transporter ATP-binding protein.
  
     0.691
sce4423
Hypothetical protein; ABC-type uncharacterized transport system involved in gliding motility auxiliary component.
 
   
 0.639
sce2427
Hypothetical protein predicted by Glimmer/Critica.
       0.620
sce5572
Putative integral membrane transport protein.
 
  
 0.588
sce2532
Hypothetical protein predicted by Glimmer/Critica.
 
   
 0.540
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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