Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
kamA1Lysine 2,3-aminomutase; Family membership. (461 aa)    
Predicted Functional Partners:
kamD
Beta-lysine 5,6-aminomutase, alpha subunit; High confidence in function and specificity.
 
  
 0.965
kamE
Beta-lysine 5,6-aminomutase, beta subunit.
 
  
 0.963
kamA2
Lysine 2,3-aminomutase; Family membership.
 
  
 
0.923
lysA-2
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
     
 0.808
lysA
LysA protein; Family membership; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
     
 0.808
sce2462
Putative Zn-dependent alcohol dehydrogenases and related dehydrogenases.
 
     0.660
yieA
Lysine--tRNA ligase; Family membership.
 
  
 0.580
sce1730
Hypothetical protein; Family membership.
   
   0.508
cheR1
Chemotaxis protein methyltransferase CheR; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.
    
   0.504
cheR2
Methyl-accepting chemotaxis protein O-methyltransferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.
    
   0.504
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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