Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
speAArginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. (647 aa)    
Predicted Functional Partners:
speB1
Agmatinase; Family membership; Belongs to the arginase family.
  
 
 0.932
sce4400
Putative agmatinase; Family membership; Belongs to the arginase family.
  
 
 0.932
speB2
Agmatinase; Family membership; Belongs to the arginase family.
  
 
 0.932
astA
Arginine N-succinyltransferase; Family membership.
  
  
  0.914
nos
Nitric-oxide synthase, oxygenase subunit; Family membership.
   
 
  0.900
sce4569
Hypothetical protein.
     
  0.900
argH
Argininosuccinate lyase; High confidence in function and specificity.
     
 0.842
sce2454
Heme exporter protein B; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family.
       0.776
truD
Hypothetical protein; Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family.
  
    0.530
sce6400
CN hydrolase domain-containing protein; Unnamed protein product; Specificity unclear.
 
  
 0.450
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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