STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce2483Hypothetical protein predicted by Glimmer/Critica. (197 aa)    
Predicted Functional Partners:
sce2482
Glycosyltransferase; Family membership.
  
    0.787
sce2484
Glycosyltransferase; Function unclear.
       0.773
topB
DNA topoisomerase III; High confidence in function and specificity.
    
 
 0.504
glf
UDP-galactopyranose mutase; High confidence in function and specificity.
  
  
 0.503
rkpK
Hypothetical protein; Predicted UDP-glucose 6-dehydrogenase.
  
  
 0.443
sce2002
Hypothetical protein predicted by Glimmer/Critica.
   
 
 0.426
treZ
Malto-oligosyltrehalose trehalohydrolase; High confidence in function and specificity.
   
 0.405
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.405
sce7170
Alpha-amylase-family protein; Family membership.
   
 0.405
sce6794
Nucleotidyltransferase; Family membership.
  
  
 0.403
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.