Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce2488Uncharacterized low-complexity proteins. (531 aa)    
Predicted Functional Partners:
sce4932
Uncharacterized low-complexity proteins.
  
     0.775
sce8473
Pentapeptide repeats hypothetical protein.
  
     0.775
sce6785
Uncharacterized low-complexity proteins.
  
     0.774
sce8118
Hypothetical; Uncharacterized low-complexity protein.
  
     0.774
sce2487
Type II secretory pathway pseudopilin.
       0.752
sce4930
Hypothetical protein.
 
     0.575
sce5662
Hypothetical protein.
 
     0.571
sce8471
Hypothetical protein.
  
     0.516
sce8759
Conserved hypothetical protein with Apaf-1 domain.
  
     0.476
mnaA
UDP-N-acetylglucosamine 2-epimerase; High confidence in function and specificity; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
       0.411
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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