Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dak2Glycerone kinase, DAK2 domain; High confidence in function and specificity. (219 aa)    
Predicted Functional Partners:
dak1
Glycerone kinase, DAK1 domain; High confidence in function and specificity.
 0.999
fruB
Fructose-specific MTP; High confidence in function and specificity; Belongs to the PEP-utilizing enzyme family.
 
 
 0.997
glpA
Glycerol-3-phosphate dehydrogenase; Family membership; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
 
 
 0.854
gldA
Glycerol-1-phosphate dehydrogenase (NAD(P)(+)).
  
 
 0.853
glpD
GlpD protein; Family membership.
  
 
 0.828
gpsA1
Glycerol-3-phosphate dehydrogenase (NAD(P)(+)); High confidence in function and specificity; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
     
 0.807
gpsA2
Glycerol-3-phosphate dehydrogenase (NAD(P)(+)); High confidence in function and specificity; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
     
 0.807
glpC
GlpC protein; Family membership.
     
  0.800
sce8682
Hypothetical protein predicted by Glimmer/Critica.
     
  0.800
phoR2
Two-component histidine kinase; Family membership.
   
 
 0.711
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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