Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce2508Putative cation/hydrogen exchanger; Specificity unclear. (731 aa)    
Predicted Functional Partners:
ptsN
Nitrogen regulatory IIA protein.
 
     0.834
sce2506
Unnamed protein product; Family membership.
 
   
 0.460
sce3693
Putative transport protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
 
  
0.451
sce0153
Putative secreted protein.
  
     0.449
sce5107
Two-component hybrid sensor and regulator; Family membership.
 
   
 0.433
sce2507
Oxidoreductase; Family membership.
       0.418
sce5923
Carrier domain-containing protein; Unnamed protein product; Family membership.
 
     0.414
sce7029
Probable Lipase.
  
     0.409
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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