Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce2516FHA domain protein. (389 aa)    
Predicted Functional Partners:
sce2515
Hypothetical protein predicted by Glimmer/Critica.
 
     0.728
sce2038
Putative protease.
  
     0.699
sce3622
Hypothetical protein.
  
     0.602
sce4975
Putative secreted protein.
  
     0.536
sce2057
Putative sphingosine kinase enzyme; High confidence in function and specificity.
  
     0.527
sce4262
Hypothetical protein.
  
 
  0.513
sce2957
Hypothetical protein; FOG: Glucan-binding domain (YG repeat).
  
     0.506
sce9355
Cellulose synthase 1 operon protein C precursor.
  
   0.455
sce5906
Putative exported glycine/glutamine-rich protein.
  
     0.450
sce0415
Uncharacterized protein containing a von Willebrand factor type A (vWA) domain.
  
     0.444
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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