Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce2532Hypothetical protein predicted by Glimmer/Critica. (614 aa)    
Predicted Functional Partners:
sce2533
Putative ABC-2 type transport system permease protein.
 
  
 0.947
sce2534
Putative ABC-2 type transport system ATP-binding protein.
 
   
 0.946
sce2531
Putative secreted protein.
 
     0.932
sce1107
Hypothetical protein.
 
     0.775
sce4278
Hypothetical protein; FOG: WD40 repeat.
  
     0.769
sce2916
Hypothetical protein predicted by Glimmer/Critica.
  
     0.768
sce0013
Hypothetical protein.
  
     0.765
sce0423
Putative membrane protein.
  
     0.761
gspK
General secretion pathway protein K; Family membership.
  
     0.760
sce5806
Protein kinase; Family membership.
  
     0.759
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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