STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce2533Putative ABC-2 type transport system permease protein. (244 aa)    
Predicted Functional Partners:
sce2534
Putative ABC-2 type transport system ATP-binding protein.
 
 
 0.971
sce2532
Hypothetical protein predicted by Glimmer/Critica.
 
  
 0.947
sce2431
Sulfate/thiosulfate import ATP-binding protein cysA; High confidence in function and specificity.
 
 
 0.863
sce4421
Putative ABC-2 type transport system ATP-binding protein.
 
 
 0.862
sce2531
Putative secreted protein.
 
     0.823
sce2429
Hypothetical protein.
 
  
 0.814
sce8335
Putative ABC transporter ATP-binding protein.
 
 
 0.781
sce4423
Hypothetical protein; ABC-type uncharacterized transport system involved in gliding motility auxiliary component.
 
  
 0.703
sce8366
Hypothetical protein predicted by Glimmer/Critica.
  
 
 0.630
sce5790
Putative ABC transporter, ATP-binding protein.
 
 
 0.567
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.