Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
trmARNA methyltransferase; Family membership; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (765 aa)    
Predicted Functional Partners:
sce2548
Hypothetical protein.
 
     0.838
sce3913
Protein kinase; Family membership.
 
    0.820
sce1616
TPR domain protein.
 
    0.803
sce4262
Hypothetical protein.
 
  
 0.802
sce8438
Hypothetical protein; DnaJ-class molecular chaperone with C-terminal Zn finger domain.
 
 
   0.796
sce8150
Two-component response regulator; Family membership.
 
   
 0.793
sce8705
Hypothetical protein predicted by Glimmer/Critica.
 
   0.786
sce0609
Hypothetical protein; FOG: TPR repeat.
 
    0.783
sce0252
Hypothetical protein predicted by Glimmer/Critica; Family membership.
 
     0.779
micA
tRNA (guanine-N7-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
 
  
 0.778
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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