Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce2561Hypothetical protein. (430 aa)    
Predicted Functional Partners:
sce2560
Sigma-54 dependent DNA-binding response regulator; Family membership.
       0.786
sce8169
Hypothetical protein.
  
     0.767
sce4056
Hypothetical protein.
  
     0.715
sce7790
Putative membrane protein.
  
     0.706
sce7530
Hypothetical protein.
  
     0.705
sce5586
Putative membrane protein.
  
     0.703
sce0825
Hypothetical protein.
  
     0.701
sce0826
Hypothetical protein.
  
     0.701
sce3992
Hypothetical protein.
  
     0.696
sce7485
Hypothetical protein.
  
     0.685
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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