Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce2588Hypothetical protein; Function unclear. (467 aa)    
Predicted Functional Partners:
clpB1
Chaperone clpB.
 
     0.790
sce2589
Probable Acetyl-CoA carboxylase; Family membership.
       0.727
resA1
Thiol-disulfide oxidoreductase resA.
       0.645
sce2278
Hypothetical protein; Probable ATPase.
 
     0.606
sce3787
Hypothetical protein; NTP pyrophosphohydrolases including oxidative damage repair enzymes.
  
     0.543
sce6215
Hypothetical protein; Family membership.
 
     0.540
sce6513
Hypothetical ATPase-like protein.
 
     0.513
sce2590
Predicted subtilisin like protease; Family membership.
       0.510
galE4
GalE4 protein; High confidence in function and specificity.
  
     0.488
sce1739
recA recombinase homolog; Family membership.
  
     0.430
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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