Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
sce2617Putative LacI-family transcriptional regulator. (827 aa)    
Predicted Functional Partners:
gltB1
Glutamate synthase (NADPH); High confidence in function and specificity.
   
 
 0.831
fruB
Fructose-specific MTP; High confidence in function and specificity; Belongs to the PEP-utilizing enzyme family.
   
 
 0.821
sce1346
Hybrid histidine kinase; Family membership.
 
 
 0.777
sce2616
Hypothetical protein predicted by Glimmer/Critica.
       0.775
sce7776
Two-component hybrid histidine kinase; Family membership.
 
 
 0.773
sce4309
Hybrid sensory histidine kinase; Family membership.
 
  
 0.698
sce3710
Sensory box/GGDEF family protein.
 
  
 0.651
sce0880
Putative anti-sigma factor antagonist; Specificity unclear; Belongs to the anti-sigma-factor antagonist family.
  
   0.642
sce7775
Response regulatory domain-containing protein; Unnamed protein product; Family membership.
  
 
 0.633
sce5976
Putative sugar regulator; Specificity unclear.
 
 
 0.630
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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