Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
codBPutative cytosine permease; Family membership. (423 aa)    
Predicted Functional Partners:
sce2619
Hypothetical protein.
     0.962
huyA2
N-methylhydantoinase A, beta-subunit (ATP-hydrolyzing); Family membership.
 
     0.901
pyrB
Aspartate carbamoyltransferase; Family membership; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
   
    0.782
carA2
Carbamoyl-phosphate synthase; Family membership; Belongs to the CarA family.
   
    0.774
carA1
Carbamoyl-phosphate synthase; Family membership.
   
    0.770
pyrD
Dihydroorotate dehydrogenase (quinone); Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
  
    0.762
huyB
N-methylhydantoinase B, alpha subunit; Family membership.
 
     0.630
huyA1
N-methylhydantoinase A, beta subunit; Family membership.
 
     0.619
sce2468
Hypothetical protein predicted by Glimmer/Critica.
   
  
 0.611
thiD
Phosphomethylpyrimidine kinase; Family membership.
  
  
 0.599
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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