Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
huyA2N-methylhydantoinase A, beta-subunit (ATP-hydrolyzing); Family membership. (513 aa)    
Predicted Functional Partners:
sce2619
Hypothetical protein.
     0.994
huyB
N-methylhydantoinase B, alpha subunit; Family membership.
 
 
 0.982
codB
Putative cytosine permease; Family membership.
 
     0.901
oplaH
5-oxoprolinase (ATP-hydrolyzing).
  
 
 0.765
huyA1
N-methylhydantoinase A, beta subunit; Family membership.
 
    
0.701
sce6400
CN hydrolase domain-containing protein; Unnamed protein product; Specificity unclear.
    
  0.503
yeiA
Dihydropyrimidine dehydrogenase; Family membership.
     
  0.500
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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