STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce2634Transposase; High confidence in function and specificity. (343 aa)    
Predicted Functional Partners:
sce1798
Putative secreted protein.
  
     0.727
sce1654
Hypothetical membrane-associated protein.
  
     0.688
sce7439
Hypothetical protein predicted by Glimmer/Critica.
  
     0.679
moaA1
Probable molybdenum cofactor biosynthesis protein A.
  
     0.678
sce5780
Hypothetical protein; FOG: TPR repeat.
  
     0.674
sce3465
Putative secreted protein.
  
     0.664
sce0893
Hypothetical protein; Predicted Zn-dependent hydrolases of the beta-lactamase fold.
  
     0.659
sce2057
Putative sphingosine kinase enzyme; High confidence in function and specificity.
  
     0.654
sce2957
Hypothetical protein; FOG: Glucan-binding domain (YG repeat).
  
     0.609
sce7161
Hypothetical protein.
  
     0.607
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.