Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce2666Hypothetical protein. (181 aa)    
Predicted Functional Partners:
sce2667
Hypothetical protein; Predicted periplasmic or secreted lipoprotein.
  
  
 0.712
sce7071
Putative ABC-transporter; Specificity unclear.
 
    0.692
sce1648
Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.
   
  
 0.608
sce8094
Hypothetical protein; Ferredoxin.
  
     0.523
sce0976
Predicted membrane protein.
  
    0.484
sce0092
Hypothetical protein predicted by Glimmer/Critica.
  
     0.474
sce1047
Hypothetical protein.
  
     0.453
sce8450
Hypothetical protein.
  
     0.429
sce1793
Hypothetical protein; Family membership.
  
     0.410
sce0440
Hypothetical protein predicted by Glimmer/Critica; Belongs to the UPF0337 (CsbD) family.
  
  
 0.401
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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