Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce2681High-affinity nitrate transporter, putative. (455 aa)    
Predicted Functional Partners:
nirB2
Nitrite reductase; High confidence in function and specificity; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
 0.987
nirD
Nitrite reductase (NAD(P)H); High confidence in function and specificity.
 
 
 0.977
nasD
Nitrite reductase (NAD(P)H).
 
 0.975
nirB1
Nitrite reductase; High confidence in function and specificity; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
 0.970
sce3489
Nitrite reductase small subunit, probable.
 
 
 0.943
narB1
Ferredoxin--nitrate reductase; Family membership; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.942
napA
Nitrate reductase; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
 
 0.929
sce1855
Hypothetical protein; Dioxygenases related to 2-nitropropane dioxygenase.
    
 0.911
sce1438
Small subunit of cytochrome c nitrite reductase; Family membership.
     
 0.908
napB
Diheme cytochrome C precursor; Family membership.
     
 0.908
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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