STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce2686Hypothetical WD-repeat protein; Family membership. (2305 aa)    
Predicted Functional Partners:
sce3550
Hypothetical protein; FOG: TPR repeat.
 
 
 0.789
sce2685
Hypothetical protein predicted by Glimmer/Critica.
       0.773
sce5337
TPR repeat hypothetical protein.
 
 
 0.771
sce0300
Hypothetical protein; Function unclear.
 
 
 0.723
sce1145
Hypothetical protein predicted by Glimmer/Critica.
   
 0.717
sce1760
Hypothetical protein predicted by Glimmer/Critica.
   
 0.717
sce8398
Hypothetical protein; No COG number.
   
 0.717
sce2817
Hypothetical protein.
 
     0.686
chlG
Putative Octaprenyltransferase; Family membership.
  
     0.679
sce0582
Hypothetical protein.
 
     0.674
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.