STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce2686Hypothetical WD-repeat protein; Family membership. (2305 aa)    
Predicted Functional Partners:
sce7444
Transcriptional regulatory protein, Sir2 family.
 
 
 0.839
cobB
Transcriptional regulatory protein, Sir2 family; Belongs to the sirtuin family. Class III subfamily.
   
 0.815
cobB-2
Hypothetical protein; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.
   
 0.815
sce6216
Hypothetical protein.
   
 0.806
sce3550
Hypothetical protein; FOG: TPR repeat.
 
 
  0.784
sce2685
Hypothetical protein predicted by Glimmer/Critica.
       0.773
sce5337
TPR repeat hypothetical protein.
 
 
  0.764
adk
Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.
   
 
 0.763
sce0300
Hypothetical protein; Function unclear.
 
 
  0.715
sce2817
Hypothetical protein.
 
     0.686
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.