Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
sce2693Putative beta-xylosidase; Family membership. (616 aa)    
Predicted Functional Partners:
sce3118
Hypothetical protein; Putative xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 43 family.
 
     0.975
xynD
Endo-1,4-beta-xylanase; High confidence in function and specificity; Belongs to the glycosyl hydrolase 43 family.
 
     0.947
sce0748
Ricin precursor and Poly(3-hydroxybutyrate) depolymerase fusion; Family membership.
 
     0.937
sce1955
Hypothetical protein predicted by Glimmer/Critica; Belongs to the glycosyl hydrolase 43 family.
 
     0.928
sce2691
Putative secreted protein.
     0.856
aguA
Xylan alpha-1,2-glucuronidase; High confidence in function and specificity; Belongs to the glycosyl hydrolase 67 family.
   
 0.843
abfB
Alpha-L-arabinofuranosidase precursor; High confidence in function and specificity.
 
     0.829
sce8904
Hypothetical protein predicted by Glimmer/Critica; Belongs to the glycosyl hydrolase 43 family.
 
     0.829
sce6693
O-Glycosyl hydrolase; Specificity unclear.
   
 0.823
sce5551
Endo-1,4-beta-xylanase; Unnamed protein product; Family membership; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
    0.774
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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