STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce2701Rhs element Vgr protein. (668 aa)    
Predicted Functional Partners:
sce2702
Unnamed protein product; Hypothetical protein.
 
   
 0.851
sce4846
Uncharacterized protein conserved in bacteria.
 
  
 0.812
sce2703
FHA domain protein.
 
     0.807
sce4987
Uncharacterized protein conserved in bacteria.
 
  
 0.796
sce9346
Uncharacterized protein conserved in bacteria.
 
  
 0.795
sce4986
Uncharacterized protein conserved in bacteria.
 
  
 0.786
sce4997
Uncharacterized protein conserved in bacteria.
 
  
 0.784
sce4998
Uncharacterized protein conserved in bacteria.
 
  
 0.784
sce9337
Hypothetical protein; Function unclear.
 
  
 0.784
sce9338
Hypothetical protein; Function unclear.
 
  
 0.784
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.