Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
meaBmethylmalonyl-CoA mutase component; Family membership. (330 aa)    
Predicted Functional Partners:
mcm
Methylmalonyl-CoA mutase; High confidence in function and specificity.
 0.999
sce7549
Isobutyryl-CoA mutase.
 
 0.991
sce1655
Putative isobutyryl-CoA mutase, chain B; High confidence in function and specificity.
 
 0.975
epi
Methylmalonyl-CoA epimerase; High confidence in function and specificity.
 
     0.950
sce3917
Putative transport system kinase; Family membership.
  
  
 
0.919
sce3292
Probable Acyl-CoA carboxylase.
 
   
 0.554
sce2718
Hypothetical protein predicted by Glimmer/Critica.
       0.533
sce2714
Positive regulator of sigma-B.
       0.525
sce1787
Acyl-CoA carboxylase subunit; High confidence in function and specificity.
 
   
 0.449
sce2719
Uncharacterized low-complexity proteins.
       0.443
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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