Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ubiE2Ubiquinone/menaquinone biosynthesis methyltransferase ubiE; High confidence in function and specificity. (499 aa)    
Predicted Functional Partners:
sce2733
Bis(5'-nucleosyl)-tetraphosphatase (symmetrical); Family membership.
     0.948
sce7093
Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical).
  
     0.691
sce4731
Hypothetical protein.
  
     0.651
sce2537
Hypothetical protein predicted by Glimmer/Critica.
  
     0.607
tlpA
Thiol:disulfide interchange protein tlpA; Family membership.
 
     0.584
sce6062
Unnamed protein product; Hypothetical protein.
  
     0.560
sce2735
Hypothetical protein predicted by Glimmer/Critica.
       0.535
czcB1
Heavy metal efflux pump, CzcB family; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.535
czcA1
Cobalt/zinc/cadmium efflux RND transporter,permease protein, CzcA family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.524
sce2672
Hypothetical protein.
  
     0.469
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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