Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce2743Putative secreted protein. (932 aa)    
Predicted Functional Partners:
sce1559
Putative secreted protein.
  
     0.774
sce5309
Putative glycosyl hydrolase; Family membership.
  
     0.711
yhjM
Cellulase; Family membership.
  
     0.706
sce4006
Bacterial type 3a, cellulose-binding domain; Family membership.
  
     0.678
yvpA
Similar to pectate lyase.
  
     0.678
sce0064
Hypothetical protein predicted by Glimmer/Critica.
 
     0.654
celC
Cellulase; High confidence in function and specificity; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.638
sce3414
Putative secreted lyase.
  
     0.636
sce2242
Putative hydrolase.
  
     0.635
sce5551
Endo-1,4-beta-xylanase; Unnamed protein product; Family membership; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
     0.612
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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