Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pdeX3',5'-cyclic-nucleotide phosphodiesterase. (255 aa)    
Predicted Functional Partners:
sce2782
cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.
       0.782
groL1
GroEL like chaperone, HSP60 family; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
       0.524
gspC2
General secretion pathway protein C fragment; Family membership.
  
     0.503
sce2849
Outer membrane efflux protein; Specificity unclear.
  
     0.499
sce7616
Adenylate cyclase; Family membership.
 
     0.496
sce9157
Probable tonb-dependent receptor signal peptide protein; Family membership.
  
     0.494
sce7910
Putative esterase; Family membership.
  
     0.486
sce3655
Lipoproteins.
  
     0.473
gspL
Putative general secretion pathway protein L; Family membership.
  
     0.471
sce3864
Hypothetical protein predicted by Glimmer/Critica.
  
     0.458
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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