Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce2848Unnamed protein product; Family membership. (487 aa)    
Predicted Functional Partners:
sce2847
Response regulator/GGDEF domain protein; Family membership.
 
  
 0.769
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.591
sce2849
Outer membrane efflux protein; Specificity unclear.
       0.548
sce8108
Sensor histidine kinase; Family membership.
  
   0.513
sce7218
Sensor histidine kinase; Family membership.
  
 
   0.505
sce6516
Sensory box histidine kinase; Family membership.
  
 
   0.491
sce6967
Probable two-component response regulator; Family membership.
  
     0.489
sce6012
Two-component sensor histidine kinase; Family membership.
 
 
 0.485
sce8798
Sensor histidine kinase; Family membership.
  
   0.482
sce5167
Sensor histidine kinase; Family membership.
  
 
   0.476
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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