STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce2850Heme exporter protein C; Family membership. (263 aa)    
Predicted Functional Partners:
sce2454
Heme exporter protein B; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family.
 
 0.999
sce9251
Putative membrane protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
 
 
 0.994
sce8530
Hypothetical protein predicted by Glimmer/Critica.
  
  
 0.915
hemD
Uroporphyrinogen-III synthase; Family membership.
  
    0.887
ccmF
Cytochrome c-type biogenesis protein; Family membership.
 
  
 0.876
sce8162
ABC transporter, ATP-binding protein.
 
  
  0.840
sce2851
Hypothetical protein predicted by Glimmer/Critica.
       0.805
sce2852
Hypothetical protein predicted by Glimmer/Critica.
       0.773
sce8172
Cytochrome C-type biogenesis protein; Possible subunit of a heme lyase.
 
   
 0.667
sce6449
Putative transcriptional regulator.
  
    0.591
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.