STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce2853Acyl-CoA dehydrogenase. (379 aa)    
Predicted Functional Partners:
sce0048
enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase; Family membership; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.989
sce0049
Thiolase; Family membership; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.946
pcaF
Putative beta-ketoadipyl CoA thiolase; Family membership; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.946
sce7554
Thiolase; Family membership; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.946
sce7652
Acetyl-CoA acyltransferase; Family membership; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.946
sce0625
Electron transfer flavoprotein alpha-subunit; Family membership.
 
 
 0.931
sce8921
Acyl-CoA dehydrogenase; Family membership.
  
  
 
0.928
sce1997
Putative Acyl-CoA dehydrogenase.
  
  
 
0.921
sce1991
Glutaryl-CoA dehydrogenase.
  
  
 
0.918
accC2
Biotin carboxylase subunit of acetyl-CoA carboxylase; Family membership.
  
 0.910
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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