Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
sce2858ahpC/TSA family protein. (203 aa)    
Predicted Functional Partners:
sce8319
Hypothetical protein; Thiol-disulfide isomerase and thioredoxins.
  
     0.773
tlpA
Thiol:disulfide interchange protein tlpA; Family membership.
 
   
 0.770
fabZ
(3R)-hydroxymyristoyl-; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs.
       0.722
sce2857
Mandelate racemase/muconate lactonizing enzyme family protein.
       0.697
sce2860
Outer membrane protein, putative.
       0.598
sce8530
Hypothetical protein predicted by Glimmer/Critica.
 
  
 0.550
sce2861
Dumpy.
       0.489
sce2899
SCO1/SenC family lipoprotein; Family membership.
  
   
 0.447
sce2140
Putative secreted protein.
  
   
 0.437
tmk
Putative Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
   
   0.436
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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