STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce2860Outer membrane protein, putative. (198 aa)    
Predicted Functional Partners:
sce4450
Probable surface antigen.
 
  
 0.867
sce7291
Hypothetical protein predicted by Glimmer/Critica.
    
 
 0.797
fabZ
(3R)-hydroxymyristoyl-; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs.
  
    0.781
sce4927
Hypothetical protein.
  
  
 0.770
sce2861
Dumpy.
  
 
 0.703
sce7969
Hypothetical protein; Family membership.
 
  
 0.690
mltD1
Murein transglycosylase; Family membership.
  
    0.682
sce1105
Putative exported protein.
 
  
 0.671
mltD3
Transglycosylase, Slt family.
  
   
 0.661
sce0395
Putative outer membrane protein.
 
  
 0.634
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.