STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bioF18-amino-7-oxononanoate synthase; Family membership. (410 aa)    
Predicted Functional Partners:
bioA
Adenosylmethionine--8-amino-7-oxononanoate transaminase; Family membership; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 0.980
bioF2
Putative 8-amino-7-oxononanoate synthase; Family membership.
  
  
 
0.925
bioD
Hypothetical protein; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.
 
  
 0.899
sce8261
Polyketide synthase type I; Family membership.
 
 
 0.880
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
  
 0.838
sce2530
acyl-CoA synthetase; Family membership.
 
  
 0.824
sce7053
acyl-CoA synthetase; Family membership.
 
  
 0.816
sce1467
Putative Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II; Family membership.
 
  
 0.746
sce7197
Hypothetical protein.
   
 0.730
tdh
Threonine 3-dehydrogenase; Family membership.
 
 
 0.725
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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