Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
phoH1PhoH family protein; High confidence in function and specificity. (439 aa)    
Predicted Functional Partners:
sce2883
Uncharacterized protein conserved in bacteria.
       0.549
sce1772
Uncharacterized conserved protein involved in stress response; Function unclear; Belongs to the UPF0229 family.
   
    0.548
spoVR
Stage V sporulation protein R; High confidence in function and specificity.
   
    0.544
prkA1
Protein kinase; Family membership.
   
  
 0.544
prkA2
Protein kinase; Family membership.
   
  
 0.544
sce2881
Sigma-54 dependent DNA-binding response regulator; Family membership.
       0.543
cafA
Ribonuclease G; Family membership.
  
    0.519
sce4286
Conserved hypothetical membrane protein.
   
    0.504
sce5341
Putative membrane protein; Function unclear.
   
    0.494
hprK
HPr kinase/phosphatase; Catalyzes the ATP- as well as the pyrophosphate-dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK/P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P-Ser-HPr).
  
     0.418
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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