STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kamEBeta-lysine 5,6-aminomutase, beta subunit. (244 aa)    
Predicted Functional Partners:
kamD
Beta-lysine 5,6-aminomutase, alpha subunit; High confidence in function and specificity.
  
  0.995
sce2462
Putative Zn-dependent alcohol dehydrogenases and related dehydrogenases.
 
 
 0.979
kamA1
Lysine 2,3-aminomutase; Family membership.
 
  
 0.963
kamA2
Lysine 2,3-aminomutase; Family membership.
 
  
 0.961
sce6192
Hypothetical protein.
 
   
 0.799
sce1784
Hypothetical protein.
 
   
 0.795
deoC
Putative Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate.
   
 
 0.736
sce2890
Hypothetical protein.
       0.401
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.