STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce2897Conserved putative secreted protein. (296 aa)    
Predicted Functional Partners:
alc
Putative Allantoicase; Family membership; Belongs to the allantoicase family.
  
    0.618
sce4394
Hypothetical protein predicted by Glimmer/Critica.
  
     0.594
sce3978
Hypothetical protein; Family membership.
  
     0.591
sce9302
Hypothetical protein.
  
     0.588
ybbT
Putative ureidoglycolate hydrolase.
  
    0.576
sce0366
Rieske Fe-S protein.
  
     0.556
tonB1
Putative TonB protein; Specificity unclear.
  
     0.508
CAN92074.1
Pseudogene.
  
     0.503
sce4381
Hypothetical protein.
  
     0.471
petB
Cytochrome b6.
  
     0.465
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.