STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce2901Hypothetical glycine rich transmembrane protein. (257 aa)    
Predicted Functional Partners:
sce2900
Protein kinase; Family membership.
       0.642
sce2902
GGDEF domain protein.
       0.552
sce7783
Hypothetical protein; COG: Type V secretory pathway, adhesin AidA.
  
     0.540
sce4313
Hypothetical protein.
  
     0.537
sce0387
Hypothetical protein; Predicted GTPases (dynamin-related).
  
     0.536
sce3130
Putative secreted protein.
  
     0.495
sce3164
Hypothetical protein predicted by Glimmer/Critica.
 
     0.464
sce2306
Hypothetical protein predicted by Glimmer/Critica.
  
     0.456
sce5887
Hypothetical protein predicted by Glimmer/Critica; Family membership.
  
     0.452
sce6070
Hypothetical protein.
  
     0.452
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.