Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce2921Tetratricopeptide repeat protein. (2081 aa)    
Predicted Functional Partners:
sce2920
Tetratricopeptide repeat protein.
 
    
0.843
sce2916
Hypothetical protein predicted by Glimmer/Critica.
 
 
 0.811
sce3131
Hypothetical protein predicted by Glimmer/Critica.
 
 
 
 0.804
sce1616
TPR domain protein.
 
   
 0.794
sce2918
FHA domain protein.
 
   0.794
sce0424
Hypothetical protein.
 
 0.793
sce8329
FHA domain protein.
 
   0.792
sce1107
Hypothetical protein.
 
   
 0.787
sce0296
FHA domain protein.
 
   0.786
gspJ
Putative general secretion pathway protein J; Specificity unclear.
  
   
 0.785
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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