STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sce2985Putative Succinate-semialdehyde dehydrogenase (NAD(P)(+)); Family membership. (537 aa)    
Predicted Functional Partners:
sce5006
Putative Aldehyde dehydrogenase (NAD(+)); Family membership.
 
     0.966
fmt1
Methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
 
      0.848
surE1
Acid phosphatase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
  
    0.706
gabT2
4-aminobutyrate transaminase; Family membership; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.602
gabT1
4-aminobutyrate transaminase; Family membership; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.597
sce9190
Putative 4-aminobutyrate transaminase; Family membership; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.586
sce9194
4-aminobutyrate transaminase; Family membership; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.586
apt
Putative Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
       0.585
sce2986
Hypothetical protein predicted by Glimmer/Critica.
   
  0.568
sce0048
enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase; Family membership; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.494
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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