STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sce2986Hypothetical protein predicted by Glimmer/Critica. (734 aa)    
Predicted Functional Partners:
sce7717
Hypothetical protein predicted by Glimmer/Critica.
    
 0.806
sce8819
Hypothetical protein; 5-nucleotidase/23-cyclic phosphodiesterase and related esterases; Belongs to the 5'-nucleotidase family.
    
 0.747
pp2c12
Phosphoprotein phosphatase; High confidence in function and specificity.
  
 0.640
sce1842
Oxidoreductase; Family membership.
   
 
 0.604
ndk
Putative Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
 0.585
sce2985
Putative Succinate-semialdehyde dehydrogenase (NAD(P)(+)); Family membership.
   
  0.568
sce1145
Hypothetical protein predicted by Glimmer/Critica.
    
 0.541
sce1760
Hypothetical protein predicted by Glimmer/Critica.
    
 0.541
sce8398
Hypothetical protein; No COG number.
    
 0.541
sce3087
Hypothetical protein.
    
 
 0.532
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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