Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
aglR2Adventurous gliding motility protein R. (220 aa)    
Predicted Functional Partners:
exbD
Putative biopolymer transport protein (ExbD-like).
 
 
 0.818
sce2995
Putative biopolymer transport protein; Family membership.
  
 
 0.742
tolR3
Biopolymer transport protein, ExbD/TolR family; Family membership.
 
 
 0.727
sce8263
tonB family protein; Family membership.
 
 
 0.719
sce7062
TonB-dependent receptor; Specificity unclear.
 
 
 0.705
gspD
General secretion pahtway protein D; Specificity unclear.
  
    0.705
aglS2
Putative adventurous gliding motility protein AglS; Specificity unclear.
  
 
 0.695
tonB1
Putative TonB protein; Specificity unclear.
  
 
 0.695
tonB2
Putative TonB protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
 0.695
tolR5
tolR protein; High confidence in function and specificity.
 
 
 0.684
Your Current Organism:
Sorangium cellulosum So ce56
NCBI taxonomy Id: 448385
Other names: S. cellulosum So ce56, Sorangium cellulosum DSM 53796, Sorangium cellulosum str. So ce56, Sorangium cellulosum strain So ce56
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